List of Malayalam Songs composed by Thankaraj
| Sl | Song | Movie | Year | Singer | Lyrics | Musician |
|---|---|---|---|---|---|---|
| 1 | Chillujannalinte arikil ... | Maattuppetti Machaan | 1998 | KS Chithra, MG Sreekumar | Bichu Thirumala | Thankaraj |
| 2 | Raasathaanada ... | Maattuppetti Machaan | 1998 | MG Sreekumar | Bichu Thirumala | Thankaraj |
| 3 | Kadukodachu ... | Maattuppetti Machaan | 1998 | KS Chithra, MG Sreekumar | Bichu Thirumala | Thankaraj |
| 4 | Shivaperumaal Orukadhayil ... | My Dear Karadi | 1999 | MG Sreekumar, Radhika Thilak | Balu Kiriyath | Thankaraj |
| 5 | Dum Dum Pattaalam ... | My Dear Karadi | 1999 | MG Sreekumar, Chorus, Manju Thomas | Balu Kiriyath | Thankaraj |
| 6 | Maadapraave ... | My Dear Karadi | 1999 | Sreenivas | Balu Kiriyath | Thankaraj |
| 7 | Shabby Baby Sharon Baby ... | Thillaana Thillaana | 2003 | Suresh Gopi, Alex Kayyalaykkal | Gireesh Puthenchery | Thankaraj |
| 8 | Kanimullakal Poothathu Pole (D) ... | Thillaana Thillaana | 2003 | KJ Yesudas, Ranjini Jose | Gireesh Puthenchery | Thankaraj |
| 9 | Kanimullakal Poothathu Pole (M) ... | Thillaana Thillaana | 2003 | KJ Yesudas | Gireesh Puthenchery | Thankaraj |
| 10 | Aareyum Kothippikkum ... | Thillaana Thillaana | 2003 | P Jayachandran | Gireesh Puthenchery | Thankaraj |
| 11 | Kandaal Minda Vaayaadi ... | Thillaana Thillaana | 2003 | Lakshmi | Gireesh Puthenchery | Thankaraj |
| 12 | I Just Can't Understand ... | Thillaana Thillaana | 2003 | Venu | Gireesh Puthenchery | Thankaraj |
| 13 | Kandaal Minda Vaayaadi [M] ... | Thillaana Thillaana | 2003 | Mohammad Ithihas | Gireesh Puthenchery | Thankaraj |